PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3847330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 311aa    MW: 33388.8 Da    PI: 7.9919
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3847330.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.66.4e-4056143288
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                      a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+  +a+ +s+s++  s +
  Lj1g3v3847330.1  56 APKRTSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaSAAGNSVSQQGTSLS 143
                      789******************************************************************8887333333333322222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-3160298IPR005333Transcription factor, TCP
PROSITE profilePS5136928.01662116IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDPKGSKQQN QEVVPNFLQQ QQQGNNNNNM GENKPSEVKD FQIVIAEKDE SKKQLAPKRT  60
SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGHKSDGE TIQWLLQQAE PSIIAATGTG  120
TIPASALASA AGNSVSQQGT SLSAGLHQKF DEMGGGGGAN SRTSWGMVGG NLGRPHVATA  180
TGLWPHVTGF GFQSSSSGPS NANLASESSN YLQKIGFPGF DLPGATTNMG PMSFTSILGG  240
GNNQHMPGLE LGLSQDGHIG VLNPQALSQI YQQMGQSRVH HQHQHQQQEH EHQHQHQQQT  300
PSNDDSQGSG Q
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.64830.0cell culture| pod| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBMTransfer from Glyma.19G095300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161676.11e-162hypothetical protein PHAVU_001G089100g
SwissprotQ9LSD55e-93TCP20_ARATH; Transcription factor TCP20
TrEMBLV7CWP01e-162V7CWP0_PHAVU; Uncharacterized protein
STRINGGLYMA19G26560.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33393269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.12e-87TCP family protein